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    Structured Review

    OriGene mouse brain cdna library
    This figure summarizes our results about the imprinting and structure of genes in this mouse region. Arrows denote transcriptional orientations. Genes written in black were shown to be biallelically expressed. Genes drawn in blue are paternally expressed, while those in red are maternally expressed. Genes written in yellow were undetectable by RT-PCR. For Begain transcribed from promoter 2, this transcript was coded blue as it is paternally expressed in sheep in a tissue specific manner, although in this study, RT-PCR failed to amplify a transcript derived from this promoter. Of these, accession numbers, AK141557, AK163826, AK048151, and AK044800, correspond to unspliced “transcripts” whose <t>cDNA</t> sequence ends in a polyA stretch of genomic DNA, suggesting that these “cDNAs” may be genomic DNA contamination in the Riken mouse cDNA libraries. For the bottom panel, exons are dark colored while introns are light. Purple lines represent the position of microRNA precursors. In all, fifty-two mouse microRNA precursors as listed in map to this imprinted region.
    Mouse Brain Cdna Library, supplied by OriGene, used in various techniques. Bioz Stars score: 90/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mouse+brain+cdna+library/SOX10+(BC002824)+Human+Untagged+Clone/pmc02632752-179-30-40
    Average 90 stars, based on 3 article reviews
    mouse brain cdna library - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1"

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0004352

    This figure summarizes our results about the imprinting and structure of genes in this mouse region. Arrows denote transcriptional orientations. Genes written in black were shown to be biallelically expressed. Genes drawn in blue are paternally expressed, while those in red are maternally expressed. Genes written in yellow were undetectable by RT-PCR. For Begain transcribed from promoter 2, this transcript was coded blue as it is paternally expressed in sheep in a tissue specific manner, although in this study, RT-PCR failed to amplify a transcript derived from this promoter. Of these, accession numbers, AK141557, AK163826, AK048151, and AK044800, correspond to unspliced “transcripts” whose cDNA sequence ends in a polyA stretch of genomic DNA, suggesting that these “cDNAs” may be genomic DNA contamination in the Riken mouse cDNA libraries. For the bottom panel, exons are dark colored while introns are light. Purple lines represent the position of microRNA precursors. In all, fifty-two mouse microRNA precursors as listed in map to this imprinted region.
    Figure Legend Snippet: This figure summarizes our results about the imprinting and structure of genes in this mouse region. Arrows denote transcriptional orientations. Genes written in black were shown to be biallelically expressed. Genes drawn in blue are paternally expressed, while those in red are maternally expressed. Genes written in yellow were undetectable by RT-PCR. For Begain transcribed from promoter 2, this transcript was coded blue as it is paternally expressed in sheep in a tissue specific manner, although in this study, RT-PCR failed to amplify a transcript derived from this promoter. Of these, accession numbers, AK141557, AK163826, AK048151, and AK044800, correspond to unspliced “transcripts” whose cDNA sequence ends in a polyA stretch of genomic DNA, suggesting that these “cDNAs” may be genomic DNA contamination in the Riken mouse cDNA libraries. For the bottom panel, exons are dark colored while introns are light. Purple lines represent the position of microRNA precursors. In all, fifty-two mouse microRNA precursors as listed in map to this imprinted region.

    Techniques Used: Reverse Transcription Polymerase Chain Reaction, Derivative Assay, Sequencing

    (A) A DraIII restriction site polymorphism between 129S1 and CzechII/Ei mice was utilized to determine that Dlk1 is paternally expressed. PCR primers were Dlk1 2Up/317Dn. (B) Northern analysis using the same Dlk1 PCR fragment as probe revealed that Dlk1 is widely expressed. Of the tissues investigated, only the adult brain is characterized by having an additional and abundant transcript that is roughly 4.5 kb in length. (C) Several ESTs cluster to the syntenic region of “DAT” ( Dlk1 associated transcript). RT-PCR was done with “DAT” primers 1533Up/2044Dn. Using a EcoO109I restriction site polymorphism, “DAT” was shown to be like Dlk1 in its paternal expression. (D) Northern analysis on adult tissue samples of “DAT” detected a 4.5 kb transcript only in the brain. This band is identical in size to the long transcript of Dlk1 found in the brain. Moreover, the length of this transcript is greater than the distance (∼2.7 kb) between mouse Dlk1 polyA and “DAT” polyA. (E) RT-PCR was performed with various primer sets. Left most panel showed that Dlk1 is expressed in brain, heart and muscle. Middle panel shows that “DAT” is only detectable in brain and is consistent with Northern findings. For the right panel, PCR was performed with a primer set in which the upstream primer ( Dlk1 1237Up) was before the canonical Dlk1 polyA site while the downstream primer was after this site ( Dlk1 1805Dn). A band was detected only in the brain, indicating that “DAT” is an alternatively polyadenylated transcript of Dlk1 . This result was confirmed by cDNA cloning (Accession numbers: EU434914-EU434917).
    Figure Legend Snippet: (A) A DraIII restriction site polymorphism between 129S1 and CzechII/Ei mice was utilized to determine that Dlk1 is paternally expressed. PCR primers were Dlk1 2Up/317Dn. (B) Northern analysis using the same Dlk1 PCR fragment as probe revealed that Dlk1 is widely expressed. Of the tissues investigated, only the adult brain is characterized by having an additional and abundant transcript that is roughly 4.5 kb in length. (C) Several ESTs cluster to the syntenic region of “DAT” ( Dlk1 associated transcript). RT-PCR was done with “DAT” primers 1533Up/2044Dn. Using a EcoO109I restriction site polymorphism, “DAT” was shown to be like Dlk1 in its paternal expression. (D) Northern analysis on adult tissue samples of “DAT” detected a 4.5 kb transcript only in the brain. This band is identical in size to the long transcript of Dlk1 found in the brain. Moreover, the length of this transcript is greater than the distance (∼2.7 kb) between mouse Dlk1 polyA and “DAT” polyA. (E) RT-PCR was performed with various primer sets. Left most panel showed that Dlk1 is expressed in brain, heart and muscle. Middle panel shows that “DAT” is only detectable in brain and is consistent with Northern findings. For the right panel, PCR was performed with a primer set in which the upstream primer ( Dlk1 1237Up) was before the canonical Dlk1 polyA site while the downstream primer was after this site ( Dlk1 1805Dn). A band was detected only in the brain, indicating that “DAT” is an alternatively polyadenylated transcript of Dlk1 . This result was confirmed by cDNA cloning (Accession numbers: EU434914-EU434917).

    Techniques Used: Northern Blot, Reverse Transcription Polymerase Chain Reaction, Expressing, Clone Assay

    Mouse cDNAs Cloned in This Study.
    Figure Legend Snippet: Mouse cDNAs Cloned in This Study.

    Techniques Used: Clone Assay, Northern Blot

    Related Articles

    cDNA Library Assay:

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
    Article Snippet: .. An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001). ..

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Article Title: Cellular Prion Protein Mediates Impairment of Synaptic Plasticity by Amyloid-β Oligomers
    Article Snippet: .. We screened an arrayed adult mouse brain cDNA library (Origene) of 225,000 clones by transfecting COS-7 cells with pools of 5,000 clones, and visually inspecting for those rare cells transfected with a cDNA conferring Aß42-oligomer binding. ..

    Article Title: Translational control by RGS2
    Article Snippet: Adenoviral titers were determined using the AdEasy Viral Titer kit according to the manufacturer's guidelines (Agilent Technologies). .. RGS2-binding partners were identified by screening against a mouse brain cDNA library using a yeast two-hybrid system (DupLEX-A; OriGene Technologies) according to the manufacturer's protocol. .. Histidine-tagged RGS1 and RGS4 proteins were expressed in Escherichia coli BL21 (DE3) strain and purified to >95% purity by nickel affinity chromatography followed by gel filtration chromatography using a 10/30 column (Superdex 75 HR; GE Healthcare) as follows: 4 liters of bacterial culture were incubated with vigorous shaking at 37°C to an OD 600 of 0.55.

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. Expression constructs The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Article Title: Regulation of endosomal motility and degradation by amyotrophic lateral sclerosis 2/alsin
    Article Snippet: .. The full-length mouse ALS2 cDNA clone was obtained by a combination of 5' RACE PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). .. The cDNA was then subcloned into modified pRK5 expression vectors [ ], which were tagged at the N-terminus with DsRed (mono), a red fluorescent protein (RFP), or EGFP obtained from Invitrogen (Grand Island, NY).

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain.
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Microelectrode Array:

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
    Article Snippet: .. An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001). ..

    Polymerase Chain Reaction:

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
    Article Snippet: .. An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001). ..

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. Expression constructs The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Article Title: Regulation of endosomal motility and degradation by amyotrophic lateral sclerosis 2/alsin
    Article Snippet: .. The full-length mouse ALS2 cDNA clone was obtained by a combination of 5' RACE PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). .. The cDNA was then subcloned into modified pRK5 expression vectors [ ], which were tagged at the N-terminus with DsRed (mono), a red fluorescent protein (RFP), or EGFP obtained from Invitrogen (Grand Island, NY).

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain.
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Clone Assay:

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
    Article Snippet: .. An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001). ..

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Article Title: Cellular Prion Protein Mediates Impairment of Synaptic Plasticity by Amyloid-β Oligomers
    Article Snippet: .. We screened an arrayed adult mouse brain cDNA library (Origene) of 225,000 clones by transfecting COS-7 cells with pools of 5,000 clones, and visually inspecting for those rare cells transfected with a cDNA conferring Aß42-oligomer binding. ..

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain.
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Cloning:

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1
    Article Snippet: .. An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001). ..

    Sequencing:

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain.
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Amplification:

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Article Title: Spatio-temporal expression analysis of the calcium-binding protein calumenin in the rodent brain.
    Article Snippet: To test whether rabbit anti-calumenin antibody (Cat. Nr HPA006018, Atlas Antibodies, Stockholm, Sweden) specifically recognizes calumenin, an antibody-competition experiment was performed. .. For that, the coding sequence of calumenin was amplified from the whole mouse brain cDNA library (a gift from Han Kyu Lee, ZMNH), and the resulting PCR product was cloned into pCMV6-AC vector (Origene, Rockville, MD, USA) using EcoRI and XhoI restriction sites. .. The correct sequence of the insert was confirmed by sequencing at VBC-Biotech Service GmbH, Vienna, Austria.

    Transfection:

    Article Title: Cellular Prion Protein Mediates Impairment of Synaptic Plasticity by Amyloid-β Oligomers
    Article Snippet: .. We screened an arrayed adult mouse brain cDNA library (Origene) of 225,000 clones by transfecting COS-7 cells with pools of 5,000 clones, and visually inspecting for those rare cells transfected with a cDNA conferring Aß42-oligomer binding. ..

    Binding Assay:

    Article Title: Cellular Prion Protein Mediates Impairment of Synaptic Plasticity by Amyloid-β Oligomers
    Article Snippet: .. We screened an arrayed adult mouse brain cDNA library (Origene) of 225,000 clones by transfecting COS-7 cells with pools of 5,000 clones, and visually inspecting for those rare cells transfected with a cDNA conferring Aß42-oligomer binding. ..

    Rapid Amplification of cDNA Ends:

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. Expression constructs The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Expressing:

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. Expression constructs The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..

    Construct:

    Article Title: Amyotrophic Lateral Sclerosis 2-Deficiency Leads to Neuronal Degeneration in Amyotrophic Lateral Sclerosis through Altered AMPA Receptor Trafficking
    Article Snippet: The experimental protocols used are in accordance with the guidelines of the Institutional Animal Care and Use Committees of the Johns Hopkins University, the University of Virginia School of Medicine, and the National Institute on Aging. .. Expression constructs The full-length mouse ALS2 cDNA clone was obtained by a combination of 5′ rapid amplification of cDNA ends PCR and screening of a mouse brain cDNA library (Origene, Rockville, MD). ..



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    Image Search Results


    This figure summarizes our results about the imprinting and structure of genes in this mouse region. Arrows denote transcriptional orientations. Genes written in black were shown to be biallelically expressed. Genes drawn in blue are paternally expressed, while those in red are maternally expressed. Genes written in yellow were undetectable by RT-PCR. For Begain transcribed from promoter 2, this transcript was coded blue as it is paternally expressed in sheep in a tissue specific manner, although in this study, RT-PCR failed to amplify a transcript derived from this promoter. Of these, accession numbers, AK141557, AK163826, AK048151, and AK044800, correspond to unspliced “transcripts” whose cDNA sequence ends in a polyA stretch of genomic DNA, suggesting that these “cDNAs” may be genomic DNA contamination in the Riken mouse cDNA libraries. For the bottom panel, exons are dark colored while introns are light. Purple lines represent the position of microRNA precursors. In all, fifty-two mouse microRNA precursors as listed in map to this imprinted region.

    Journal: PLoS ONE

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1

    doi: 10.1371/journal.pone.0004352

    Figure Lengend Snippet: This figure summarizes our results about the imprinting and structure of genes in this mouse region. Arrows denote transcriptional orientations. Genes written in black were shown to be biallelically expressed. Genes drawn in blue are paternally expressed, while those in red are maternally expressed. Genes written in yellow were undetectable by RT-PCR. For Begain transcribed from promoter 2, this transcript was coded blue as it is paternally expressed in sheep in a tissue specific manner, although in this study, RT-PCR failed to amplify a transcript derived from this promoter. Of these, accession numbers, AK141557, AK163826, AK048151, and AK044800, correspond to unspliced “transcripts” whose cDNA sequence ends in a polyA stretch of genomic DNA, suggesting that these “cDNAs” may be genomic DNA contamination in the Riken mouse cDNA libraries. For the bottom panel, exons are dark colored while introns are light. Purple lines represent the position of microRNA precursors. In all, fifty-two mouse microRNA precursors as listed in map to this imprinted region.

    Article Snippet: An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001).

    Techniques: Reverse Transcription Polymerase Chain Reaction, Derivative Assay, Sequencing

    (A) A DraIII restriction site polymorphism between 129S1 and CzechII/Ei mice was utilized to determine that Dlk1 is paternally expressed. PCR primers were Dlk1 2Up/317Dn. (B) Northern analysis using the same Dlk1 PCR fragment as probe revealed that Dlk1 is widely expressed. Of the tissues investigated, only the adult brain is characterized by having an additional and abundant transcript that is roughly 4.5 kb in length. (C) Several ESTs cluster to the syntenic region of “DAT” ( Dlk1 associated transcript). RT-PCR was done with “DAT” primers 1533Up/2044Dn. Using a EcoO109I restriction site polymorphism, “DAT” was shown to be like Dlk1 in its paternal expression. (D) Northern analysis on adult tissue samples of “DAT” detected a 4.5 kb transcript only in the brain. This band is identical in size to the long transcript of Dlk1 found in the brain. Moreover, the length of this transcript is greater than the distance (∼2.7 kb) between mouse Dlk1 polyA and “DAT” polyA. (E) RT-PCR was performed with various primer sets. Left most panel showed that Dlk1 is expressed in brain, heart and muscle. Middle panel shows that “DAT” is only detectable in brain and is consistent with Northern findings. For the right panel, PCR was performed with a primer set in which the upstream primer ( Dlk1 1237Up) was before the canonical Dlk1 polyA site while the downstream primer was after this site ( Dlk1 1805Dn). A band was detected only in the brain, indicating that “DAT” is an alternatively polyadenylated transcript of Dlk1 . This result was confirmed by cDNA cloning (Accession numbers: EU434914-EU434917).

    Journal: PLoS ONE

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1

    doi: 10.1371/journal.pone.0004352

    Figure Lengend Snippet: (A) A DraIII restriction site polymorphism between 129S1 and CzechII/Ei mice was utilized to determine that Dlk1 is paternally expressed. PCR primers were Dlk1 2Up/317Dn. (B) Northern analysis using the same Dlk1 PCR fragment as probe revealed that Dlk1 is widely expressed. Of the tissues investigated, only the adult brain is characterized by having an additional and abundant transcript that is roughly 4.5 kb in length. (C) Several ESTs cluster to the syntenic region of “DAT” ( Dlk1 associated transcript). RT-PCR was done with “DAT” primers 1533Up/2044Dn. Using a EcoO109I restriction site polymorphism, “DAT” was shown to be like Dlk1 in its paternal expression. (D) Northern analysis on adult tissue samples of “DAT” detected a 4.5 kb transcript only in the brain. This band is identical in size to the long transcript of Dlk1 found in the brain. Moreover, the length of this transcript is greater than the distance (∼2.7 kb) between mouse Dlk1 polyA and “DAT” polyA. (E) RT-PCR was performed with various primer sets. Left most panel showed that Dlk1 is expressed in brain, heart and muscle. Middle panel shows that “DAT” is only detectable in brain and is consistent with Northern findings. For the right panel, PCR was performed with a primer set in which the upstream primer ( Dlk1 1237Up) was before the canonical Dlk1 polyA site while the downstream primer was after this site ( Dlk1 1805Dn). A band was detected only in the brain, indicating that “DAT” is an alternatively polyadenylated transcript of Dlk1 . This result was confirmed by cDNA cloning (Accession numbers: EU434914-EU434917).

    Article Snippet: An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001).

    Techniques: Northern Blot, Reverse Transcription Polymerase Chain Reaction, Expressing, Clone Assay

    Mouse cDNAs Cloned in This Study.

    Journal: PLoS ONE

    Article Title: At Least Ten Genes Define the Imprinted Dlk1-Dio3 Cluster on Mouse Chromosome 12qF1

    doi: 10.1371/journal.pone.0004352

    Figure Lengend Snippet: Mouse cDNAs Cloned in This Study.

    Article Snippet: An arrayed mouse day 19 embryo cDNA library (Origene MEA-1001) was screened by PCR to isolate Irm , Meg8 , Meg9 , Peg11 , and anti-Peg11 clones, while an adult mouse brain cDNA library was used for Dlk1 /“DAT” cloning (Origene MAB-1001).

    Techniques: Clone Assay, Northern Blot